../../tmp/servers/virsirnadb/2104602423
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1231 | 1 | cacatgagatgtactgggt | 19 | |
| AY277251.1 | West Nile virus isolate LEIV-Krnd88-190, complete genome | 8313 | ................... | 8331 | 100 |
| AY765264.1 | West Nile virus strain Rabensburg isolate 97-103, complete genome | 8327 | ................... | 8345 | 100 |
| DQ256376.1 | West Nile virus strain 804994, complete genome | 8327 | ................... | 8345 | 100 |
| FJ159129.1 | West Nile virus isolate 101_5-06-Uu, complete genome | 8291 | ................... | 8309 | 100 |
| FJ159130.1 | West Nile virus isolate 5_50-05-Uu, complete genome | 8291 | ................... | 8309 | 100 |
| FJ159131.1 | West Nile virus isolate 8_1-05-Uu, complete genome | 8291 | ................... | 8309 | 100 |
| AY532665.1 | West Nile virus strain B956 polyprotein gene, complete genome | 8318 | .c................. | 8336 | 94 |
| DQ116961.1 | West Nile virus isolate goshawk-Hungary/04, complete genome | 8330 | .c................. | 8348 | 94 |
| DQ318019.1 | West Nile virus strain ArD76104, complete genome | 8318 | .c................. | 8336 | 94 |
| DQ318020.1 | Wets NIle virus strain ArB3573/82, complete genome | 8330 | .c................. | 8348 | 94 |
| EF429197.1 | West Nile virus SPU116/89, complete genome | 8330 | .c................. | 8348 | 94 |
| EF429198.1 | West Nile virus SA93/01, complete genome | 8330 | .c................. | 8348 | 94 |
| EF429199.1 | West Nile virus SA381/00, complete genome | 8330 | .c................. | 8348 | 94 |
| EF429200.1 | West Nile virus H442, complete genome | 8330 | .c................. | 8348 | 94 |
| EU068667.1 | West Nile virus isolate SPU116-89 polyprotein gene, complete cds | 8234 | .c................. | 8252 | 94 |
| FJ425721.1 | West Nile virus isolate Reb_VLG_07_H polyprotein gene, complete cds | 8297 | .c................. | 8315 | 94 |
| HM147823.1 | West Nile virus from Madagascar, complete genome | 8330 | .c................. | 8348 | 94 |
| HM147824.1 | West Nile virus from Democratic Republic of the Congo, complete genom | 8330 | .c................. | 8348 | 94 |
| HQ537483.1 | West Nile virus isolate Nea Santa-Greece-2010, complete genome | 8330 | .c................. | 8348 | 94 |
| M12294.2 | WNFCG West Nile virus RNA, complete genome | 8318 | .c................. | 8336 | 94 |
| AF260969.1 | West Nile virus strain RO97-50, complete genome | 8327 | .g..c.............. | 8345 | 89 |
| AF317203.1 | West Nile virus VLG-4 polyprotein precursor, gene, complete cds | 8295 | .g..c.............. | 8313 | 89 |
| AF404757.1 | West Nile virus isolate WN Italy 1998-equine, complete genome | 8327 | .g..c.............. | 8345 | 89 |
| AY277252.1 | West Nile virus isolate LEIV-Vlg99-27889, complete genome | 8327 | .g..c.............. | 8345 | 89 |
| AY278442.1 | West Nile virus isolate LEIV-Vlg00-27924, complete genome | 8327 | .g..c.............. | 8345 | 89 |
| AY268132.1 | West Nile virus strain PaAn001 polyprotein (pol) gene, complete cds | 8307 | .g..c.............. | 8325 | 89 |
| AY701412.1 | West Nile virus strain 96-111 polyprotein gene, complete cds | 8285 | .g..c.............. | 8303 | 89 |
| AY701413.1 | West Nile virus strain 04.05 polyprotein gene, complete cds | 8285 | .g..c.............. | 8303 | 89 |
| AY688948.1 | West Nile virus strain Sarafend, complete genome | 8330 | .t...........t..... | 8348 | 89 |
| DQ431711.1 | West Nile virus isolate 04-251AZ polyprotein precursor, gene, complet | 8231 | .g..c.............. | 8249 | 89 |
| DQ786572.1 | West Nile virus isolate France 405/04 polyprotein gene, complete cds | 8303 | .g..c.............. | 8321 | 89 |
| DQ786573.1 | West Nile virus isolate France 407/04 polyprotein gene, complete cds | 8303 | .g..c.............. | 8321 | 89 |
| DQ176636.2 | West Nile virus strain Madagascar-AnMg798, complete genome | 8329 | .t.....a........... | 8347 | 89 |
| FJ483548.1 | West Nile virus strain 15217, complete genome | 8327 | .g..c.............. | 8345 | 89 |
| FJ483549.1 | West Nile virus strain 15803, complete genome | 8327 | .g..c.............. | 8345 | 89 |
| AJ965626.2 | West Nile virus strain PT6.16 polyprotein, genomic RNA | 8302 | .g..c.............. | 8320 | 89 |
| AJ965628.2 | West Nile virus strain PT5.2 polyprotein, genomic RNA, complete genom | 8302 | .g..c.............. | 8320 | 89 |
| GU011992.2 | West Nile virus strain Ita09, complete genome | 8327 | .g..c.............. | 8345 | 89 |
| HM147822.1 | West Nile virus from South Africa, complete genome | 8330 | .c...........t..... | 8348 | 89 |